samples.py

Overview

This module contains a class that is used to model sample properties and attributes.

Usage

Instantiating a sample

Class and method documentation

txseq.tasks.samples.check_values(pd_frame, col, allowed)

utility function for sanity checking columns

class txseq.tasks.samples.sample(attributes, fastq=True)

Bases: object

A class for modelling samples.

show()

Print the api object for debugging.

class txseq.tasks.samples.samples(sample_tsv, library_tsv=None)

Bases: object

A class for modelling a set of samples and their associated FASTQ files