Pipelines
---------

.. toctree::
   :maxdepth: 1

   pipelines/pipeline_bamqc.rst
   pipelines/pipeline_ensembl.rst
   pipelines/pipeline_fastqc.rst
   pipelines/pipeline_feature_counts.rst
   pipelines/pipeline_hisat_index.rst
   pipelines/pipeline_hisat.rst
   pipelines/pipeline_preprocess_quantseq_fwd.rst
   pipelines/pipeline_salmon_index.rst
   pipelines/pipeline_salmon.rst